Unified MCP access to genomic archives, reference databases and indexed sequencing files
Setup
Choose your client, copy the config, then fill in any required environment variables.
claude mcp add genomics -- docker run -i --rm ghcr.io/rewire-bio/genomics-mcp:0.1.0~/.codex/config.toml
[mcp_servers.genomics]
command = "docker"
args = ["run", "-i", "--rm", "ghcr.io/rewire-bio/genomics-mcp:0.1.0"]
# codex mcp add genomics -- docker run -i --rm ghcr.io/rewire-bio/genomics-mcp:0.1.0~/.cursor/mcp.json
{
"mcpServers": {
"genomics": {
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"ghcr.io/rewire-bio/genomics-mcp:0.1.0"
]
}
}
}.vscode/mcp.json
{
"servers": {
"genomics": {
"type": "stdio",
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"ghcr.io/rewire-bio/genomics-mcp:0.1.0"
]
}
}
}~/.gemini/settings.json
{
"mcpServers": {
"genomics": {
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"ghcr.io/rewire-bio/genomics-mcp:0.1.0"
]
}
}
}claude_desktop_config.json
{
"mcpServers": {
"genomics": {
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"ghcr.io/rewire-bio/genomics-mcp:0.1.0"
]
}
}
}.trae/mcp.json
{
"mcpServers": {
"genomics": {
"command": "docker",
"args": [
"run",
"-i",
"--rm",
"ghcr.io/rewire-bio/genomics-mcp:0.1.0"
]
}
}
}