BioMed MCP over AlphaFold DB + 8 public sources, with SQLite knowledge graph, offline mode, and explicit clinical-use limits.
Setup
Choose your client, copy the config, then fill in any required environment variables.
claude mcp add alphafold-sovereign -- uvx alphafold-sovereign-mcp~/.codex/config.toml
[mcp_servers.alphafold-sovereign]
command = "uvx"
args = ["alphafold-sovereign-mcp"]
# codex mcp add alphafold-sovereign -- uvx alphafold-sovereign-mcp~/.cursor/mcp.json
{
"mcpServers": {
"alphafold-sovereign": {
"command": "uvx",
"args": [
"alphafold-sovereign-mcp"
]
}
}
}.vscode/mcp.json
{
"servers": {
"alphafold-sovereign": {
"type": "stdio",
"command": "uvx",
"args": [
"alphafold-sovereign-mcp"
]
}
}
}~/.gemini/settings.json
{
"mcpServers": {
"alphafold-sovereign": {
"command": "uvx",
"args": [
"alphafold-sovereign-mcp"
]
}
}
}claude_desktop_config.json
{
"mcpServers": {
"alphafold-sovereign": {
"command": "uvx",
"args": [
"alphafold-sovereign-mcp"
]
}
}
}.trae/mcp.json
{
"mcpServers": {
"alphafold-sovereign": {
"command": "uvx",
"args": [
"alphafold-sovereign-mcp"
]
}
}
}