PubMed MCP Server

Name: PubMed MCP Server
Author: cyanheads

cyanheads

开始使用源码仓库官网与文档

Search PubMed and Europe PMC, fetch articles and full text, citations and MeSH terms.

接入配置

选择客户端，复制配置，再按项目文档补齐环境变量。

一键添加到 Cursor 一键添加到 VS Code

本地运行

claude mcp add pubmed --env MCP_TRANSPORT_TYPE='<MCP_TRANSPORT_TYPE>' --env MCP_LOG_LEVEL='<MCP_LOG_LEVEL>' --env NCBI_API_KEY='<NCBI_API_KEY>' -- npx -y @cyanheads/pubmed-mcp-server

~/.codex/config.toml

[mcp_servers.pubmed]
command = "npx"
args = ["-y", "@cyanheads/pubmed-mcp-server"]
env = { MCP_TRANSPORT_TYPE = "<MCP_TRANSPORT_TYPE>", MCP_LOG_LEVEL = "<MCP_LOG_LEVEL>", NCBI_API_KEY = "<NCBI_API_KEY>" }

# codex mcp add pubmed --env MCP_TRANSPORT_TYPE='<MCP_TRANSPORT_TYPE>' --env MCP_LOG_LEVEL='<MCP_LOG_LEVEL>' --env NCBI_API_KEY='<NCBI_API_KEY>' -- npx -y @cyanheads/pubmed-mcp-server

~/.cursor/mcp.json

{
  "mcpServers": {
    "pubmed": {
      "command": "npx",
      "args": [
        "-y",
        "@cyanheads/pubmed-mcp-server"
      ],
      "env": {
        "MCP_TRANSPORT_TYPE": "<MCP_TRANSPORT_TYPE>",
        "MCP_LOG_LEVEL": "<MCP_LOG_LEVEL>",
        "NCBI_API_KEY": "<NCBI_API_KEY>"
      }
    }
  }
}

.vscode/mcp.json

{
  "servers": {
    "pubmed": {
      "type": "stdio",
      "command": "npx",
      "args": [
        "-y",
        "@cyanheads/pubmed-mcp-server"
      ],
      "env": {
        "MCP_TRANSPORT_TYPE": "<MCP_TRANSPORT_TYPE>",
        "MCP_LOG_LEVEL": "<MCP_LOG_LEVEL>",
        "NCBI_API_KEY": "<NCBI_API_KEY>"
      }
    }
  }
}

~/.gemini/settings.json

{
  "mcpServers": {
    "pubmed": {
      "command": "npx",
      "args": [
        "-y",
        "@cyanheads/pubmed-mcp-server"
      ],
      "env": {
        "MCP_TRANSPORT_TYPE": "<MCP_TRANSPORT_TYPE>",
        "MCP_LOG_LEVEL": "<MCP_LOG_LEVEL>",
        "NCBI_API_KEY": "<NCBI_API_KEY>"
      }
    }
  }
}

claude_desktop_config.json

{
  "mcpServers": {
    "pubmed": {
      "command": "npx",
      "args": [
        "-y",
        "@cyanheads/pubmed-mcp-server"
      ],
      "env": {
        "MCP_TRANSPORT_TYPE": "<MCP_TRANSPORT_TYPE>",
        "MCP_LOG_LEVEL": "<MCP_LOG_LEVEL>",
        "NCBI_API_KEY": "<NCBI_API_KEY>"
      }
    }
  }
}

.trae/mcp.json

{
  "mcpServers": {
    "pubmed": {
      "command": "npx",
      "args": [
        "-y",
        "@cyanheads/pubmed-mcp-server"
      ],
      "env": {
        "MCP_TRANSPORT_TYPE": "<MCP_TRANSPORT_TYPE>",
        "MCP_LOG_LEVEL": "<MCP_LOG_LEVEL>",
        "NCBI_API_KEY": "<NCBI_API_KEY>"
      }
    }
  }
}

远程托管

claude mcp add --transport http pubmed https://pubmed.caseyjhand.com/mcp

~/.codex/config.toml

[mcp_servers.pubmed]
url = "https://pubmed.caseyjhand.com/mcp"

# codex mcp add pubmed --url https://pubmed.caseyjhand.com/mcp

~/.cursor/mcp.json

{
  "mcpServers": {
    "pubmed": {
      "url": "https://pubmed.caseyjhand.com/mcp"
    }
  }
}

.vscode/mcp.json

{
  "servers": {
    "pubmed": {
      "type": "http",
      "url": "https://pubmed.caseyjhand.com/mcp"
    }
  }
}

~/.gemini/settings.json

{
  "mcpServers": {
    "pubmed": {
      "httpUrl": "https://pubmed.caseyjhand.com/mcp"
    }
  }
}

claude_desktop_config.json · Customize › Connectors › Add custom connector

{
  "mcpServers": {
    "pubmed": {
      "command": "npx",
      "args": [
        "-y",
        "mcp-remote",
        "https://pubmed.caseyjhand.com/mcp"
      ]
    }
  }
}

.trae/mcp.json

{
  "mcpServers": {
    "pubmed": {
      "url": "https://pubmed.caseyjhand.com/mcp"
    }
  }
}

需要的环境变量

MCP_TRANSPORT_TYPE
MCP_LOG_LEVEL
NCBI_API_KEY

把占位值换成你自己的密钥；不要把密钥提交到代码仓库。

接入配置

本地运行

远程托管

需要的环境变量

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