Democratizing Agentic Access to Bioinformatics and Biopharmaceutical Databases and Analyses with BioMCP-TS. Part of the BioResearcher Agent Suite.
接入配置
选择客户端，复制配置，再按项目文档补齐环境变量。
claude mcp add biomcp-ts --env NCBI_API_KEY='<NCBI_API_KEY>' --env S2_API_KEY='<S2_API_KEY>' --env OPENFDA_API_KEY='<OPENFDA_API_KEY>' --env ONCOKB_TOKEN='<ONCOKB_TOKEN>' --env DISGENET_API_KEY='<DISGENET_API_KEY>' -- npx -y biomcp~/.codex/config.toml
[mcp_servers.biomcp-ts]
command = "npx"
args = ["-y", "biomcp"]
env = { NCBI_API_KEY = "<NCBI_API_KEY>", S2_API_KEY = "<S2_API_KEY>", OPENFDA_API_KEY = "<OPENFDA_API_KEY>", ONCOKB_TOKEN = "<ONCOKB_TOKEN>", DISGENET_API_KEY = "<DISGENET_API_KEY>" }
# codex mcp add biomcp-ts --env NCBI_API_KEY='<NCBI_API_KEY>' --env S2_API_KEY='<S2_API_KEY>' --env OPENFDA_API_KEY='<OPENFDA_API_KEY>' --env ONCOKB_TOKEN='<ONCOKB_TOKEN>' --env DISGENET_API_KEY='<DISGENET_API_KEY>' -- npx -y biomcp~/.cursor/mcp.json
{
"mcpServers": {
"biomcp-ts": {
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"NCBI_API_KEY": "<NCBI_API_KEY>",
"S2_API_KEY": "<S2_API_KEY>",
"OPENFDA_API_KEY": "<OPENFDA_API_KEY>",
"ONCOKB_TOKEN": "<ONCOKB_TOKEN>",
"DISGENET_API_KEY": "<DISGENET_API_KEY>"
}
}
}
}.vscode/mcp.json
{
"servers": {
"biomcp-ts": {
"type": "stdio",
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"NCBI_API_KEY": "<NCBI_API_KEY>",
"S2_API_KEY": "<S2_API_KEY>",
"OPENFDA_API_KEY": "<OPENFDA_API_KEY>",
"ONCOKB_TOKEN": "<ONCOKB_TOKEN>",
"DISGENET_API_KEY": "<DISGENET_API_KEY>"
}
}
}
}~/.gemini/settings.json
{
"mcpServers": {
"biomcp-ts": {
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"NCBI_API_KEY": "<NCBI_API_KEY>",
"S2_API_KEY": "<S2_API_KEY>",
"OPENFDA_API_KEY": "<OPENFDA_API_KEY>",
"ONCOKB_TOKEN": "<ONCOKB_TOKEN>",
"DISGENET_API_KEY": "<DISGENET_API_KEY>"
}
}
}
}claude_desktop_config.json
{
"mcpServers": {
"biomcp-ts": {
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"NCBI_API_KEY": "<NCBI_API_KEY>",
"S2_API_KEY": "<S2_API_KEY>",
"OPENFDA_API_KEY": "<OPENFDA_API_KEY>",
"ONCOKB_TOKEN": "<ONCOKB_TOKEN>",
"DISGENET_API_KEY": "<DISGENET_API_KEY>"
}
}
}
}.trae/mcp.json
{
"mcpServers": {
"biomcp-ts": {
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"NCBI_API_KEY": "<NCBI_API_KEY>",
"S2_API_KEY": "<S2_API_KEY>",
"OPENFDA_API_KEY": "<OPENFDA_API_KEY>",
"ONCOKB_TOKEN": "<ONCOKB_TOKEN>",
"DISGENET_API_KEY": "<DISGENET_API_KEY>"
}
}
}
}需要的环境变量
NCBI_API_KEYS2_API_KEYOPENFDA_API_KEYONCOKB_TOKENDISGENET_API_KEY
把占位值换成你自己的密钥；不要把密钥提交到代码仓库。