PubTator MCP Server

claude mcp add pubtator --env MCP_HOST='<MCP_HOST>' --env MCP_PORT='<MCP_PORT>' --env MCP_TRANSPORT='<MCP_TRANSPORT>' -- python -m pubtator-mcp-server

~/.codex/config.toml

[mcp_servers.pubtator]
command = "python"
args = ["-m", "pubtator-mcp-server"]
env = { MCP_HOST = "<MCP_HOST>", MCP_PORT = "<MCP_PORT>", MCP_TRANSPORT = "<MCP_TRANSPORT>" }

# codex mcp add pubtator --env MCP_HOST='<MCP_HOST>' --env MCP_PORT='<MCP_PORT>' --env MCP_TRANSPORT='<MCP_TRANSPORT>' -- python -m pubtator-mcp-server

~/.cursor/mcp.json

{
  "mcpServers": {
    "pubtator": {
      "command": "python",
      "args": [
        "-m",
        "pubtator-mcp-server"
      ],
      "env": {
        "MCP_HOST": "<MCP_HOST>",
        "MCP_PORT": "<MCP_PORT>",
        "MCP_TRANSPORT": "<MCP_TRANSPORT>"
      }
    }
  }
}

.vscode/mcp.json

{
  "servers": {
    "pubtator": {
      "type": "stdio",
      "command": "python",
      "args": [
        "-m",
        "pubtator-mcp-server"
      ],
      "env": {
        "MCP_HOST": "<MCP_HOST>",
        "MCP_PORT": "<MCP_PORT>",
        "MCP_TRANSPORT": "<MCP_TRANSPORT>"
      }
    }
  }
}

~/.gemini/settings.json

{
  "mcpServers": {
    "pubtator": {
      "command": "python",
      "args": [
        "-m",
        "pubtator-mcp-server"
      ],
      "env": {
        "MCP_HOST": "<MCP_HOST>",
        "MCP_PORT": "<MCP_PORT>",
        "MCP_TRANSPORT": "<MCP_TRANSPORT>"
      }
    }
  }
}

claude_desktop_config.json

{
  "mcpServers": {
    "pubtator": {
      "command": "python",
      "args": [
        "-m",
        "pubtator-mcp-server"
      ],
      "env": {
        "MCP_HOST": "<MCP_HOST>",
        "MCP_PORT": "<MCP_PORT>",
        "MCP_TRANSPORT": "<MCP_TRANSPORT>"
      }
    }
  }
}

.trae/mcp.json

{
  "mcpServers": {
    "pubtator": {
      "command": "python",
      "args": [
        "-m",
        "pubtator-mcp-server"
      ],
      "env": {
        "MCP_HOST": "<MCP_HOST>",
        "MCP_PORT": "<MCP_PORT>",
        "MCP_TRANSPORT": "<MCP_TRANSPORT>"
      }
    }
  }
}