OpenHCS

Name: OpenHCS
Author: OpenHCSDev

OpenHCSDev

Typed, reproducible high-content microscopy workflows across GUI, Python, CellProfiler, Napari/Fiji, GPU, and local MCP agents.

Setup

Choose your client, copy the config, then fill in any required environment variables.

claude mcp add openhcs -- uvx openhcs

~/.codex/config.toml

[mcp_servers.openhcs]
command = "uvx"
args = ["openhcs"]

# codex mcp add openhcs -- uvx openhcs

~/.cursor/mcp.json

{
  "mcpServers": {
    "openhcs": {
      "command": "uvx",
      "args": [
        "openhcs"
      ]
    }
  }
}

.vscode/mcp.json

{
  "servers": {
    "openhcs": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "openhcs"
      ]
    }
  }
}

~/.gemini/settings.json

{
  "mcpServers": {
    "openhcs": {
      "command": "uvx",
      "args": [
        "openhcs"
      ]
    }
  }
}

claude_desktop_config.json

{
  "mcpServers": {
    "openhcs": {
      "command": "uvx",
      "args": [
        "openhcs"
      ]
    }
  }
}

.trae/mcp.json

{
  "mcpServers": {
    "openhcs": {
      "command": "uvx",
      "args": [
        "openhcs"
      ]
    }
  }
}