Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion)

Name: Mass Spectrometry Data (mzML, Bruker TDF, vendor conversion)
Author: K-Dense-AI

K-Dense-AI

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MCP server for LC-MS data in mzML/mzMLb and Bruker timsTOF files; vendor formats via msconvert.

Setup

Choose your client, copy the config, then fill in any required environment variables.

Add to Cursor Add to VS Code

claude mcp add mass-spectrometry-data-mzml-bruker-tdf-v -- uvx labmcp-ms-data

~/.codex/config.toml

[mcp_servers.mass-spectrometry-data-mzml-bruker-tdf-v]
command = "uvx"
args = ["labmcp-ms-data"]

# codex mcp add mass-spectrometry-data-mzml-bruker-tdf-v -- uvx labmcp-ms-data

~/.cursor/mcp.json

{
  "mcpServers": {
    "mass-spectrometry-data-mzml-bruker-tdf-v": {
      "command": "uvx",
      "args": [
        "labmcp-ms-data"
      ]
    }
  }
}

.vscode/mcp.json

{
  "servers": {
    "mass-spectrometry-data-mzml-bruker-tdf-v": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "labmcp-ms-data"
      ]
    }
  }
}

~/.gemini/settings.json

{
  "mcpServers": {
    "mass-spectrometry-data-mzml-bruker-tdf-v": {
      "command": "uvx",
      "args": [
        "labmcp-ms-data"
      ]
    }
  }
}

claude_desktop_config.json

{
  "mcpServers": {
    "mass-spectrometry-data-mzml-bruker-tdf-v": {
      "command": "uvx",
      "args": [
        "labmcp-ms-data"
      ]
    }
  }
}

.trae/mcp.json

{
  "mcpServers": {
    "mass-spectrometry-data-mzml-bruker-tdf-v": {
      "command": "uvx",
      "args": [
        "labmcp-ms-data"
      ]
    }
  }
}

Setup

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