g:Profiler (University of Tartu) — functional enrichment analysis for a gene list against GO, KEGG, Reactome, WikiPathways, TRANSFAC, miRTarBase, CORUM, HPA and HPO, plus gene/protein ID conversion and cross-species ortholog mapping. Keyless.
Setup
Choose your client, copy the config, then fill in any required environment variables.
claude mcp add --transport http gprofiler https://gateway.pipeworx.io/gprofiler/mcp~/.codex/config.toml
[mcp_servers.gprofiler]
url = "https://gateway.pipeworx.io/gprofiler/mcp"
# codex mcp add gprofiler --url https://gateway.pipeworx.io/gprofiler/mcp~/.cursor/mcp.json
{
"mcpServers": {
"gprofiler": {
"url": "https://gateway.pipeworx.io/gprofiler/mcp"
}
}
}.vscode/mcp.json
{
"servers": {
"gprofiler": {
"type": "http",
"url": "https://gateway.pipeworx.io/gprofiler/mcp"
}
}
}~/.gemini/settings.json
{
"mcpServers": {
"gprofiler": {
"httpUrl": "https://gateway.pipeworx.io/gprofiler/mcp"
}
}
}claude_desktop_config.json · Customize › Connectors › Add custom connector
{
"mcpServers": {
"gprofiler": {
"command": "npx",
"args": [
"-y",
"mcp-remote",
"https://gateway.pipeworx.io/gprofiler/mcp"
]
}
}
}.trae/mcp.json
{
"mcpServers": {
"gprofiler": {
"url": "https://gateway.pipeworx.io/gprofiler/mcp"
}
}
}