Ena

Name: Ena
Author: pipeworx-io

pipeworx-io

European Nucleotide Archive (ENA) — EMBL-EBI's public record of raw sequencing runs, assemblies and annotated sequence, searchable by organism, study, platform, collection country or date, with the FASTQ/BAM download URLs and checksums for every run.

Setup

Choose your client, copy the config, then fill in any required environment variables.

Add to Cursor Add to VS Code

claude mcp add --transport http ena https://gateway.pipeworx.io/ena/mcp

~/.codex/config.toml

[mcp_servers.ena]
url = "https://gateway.pipeworx.io/ena/mcp"

# codex mcp add ena --url https://gateway.pipeworx.io/ena/mcp

~/.cursor/mcp.json

{
  "mcpServers": {
    "ena": {
      "url": "https://gateway.pipeworx.io/ena/mcp"
    }
  }
}

.vscode/mcp.json

{
  "servers": {
    "ena": {
      "type": "http",
      "url": "https://gateway.pipeworx.io/ena/mcp"
    }
  }
}

~/.gemini/settings.json

{
  "mcpServers": {
    "ena": {
      "httpUrl": "https://gateway.pipeworx.io/ena/mcp"
    }
  }
}

claude_desktop_config.json · Customize › Connectors › Add custom connector

{
  "mcpServers": {
    "ena": {
      "command": "npx",
      "args": [
        "-y",
        "mcp-remote",
        "https://gateway.pipeworx.io/ena/mcp"
      ]
    }
  }
}

.trae/mcp.json

{
  "mcpServers": {
    "ena": {
      "url": "https://gateway.pipeworx.io/ena/mcp"
    }
  }
}

Setup

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