ChatSpatial

Name: ChatSpatial
Author: cafferychen777

cafferychen777

Runs spatial transcriptomics analysis in natural language, including cell annotation, deconvolution, spatial statistics and plots.

Setup

Choose your client, copy the config, then fill in any required environment variables.

claude mcp add chatspatial -- uvx chatspatial

~/.codex/config.toml

[mcp_servers.chatspatial]
command = "uvx"
args = ["chatspatial"]

# codex mcp add chatspatial -- uvx chatspatial

~/.cursor/mcp.json

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}

.vscode/mcp.json

{
  "servers": {
    "chatspatial": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}

~/.gemini/settings.json

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}

claude_desktop_config.json

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}

.trae/mcp.json

{
  "mcpServers": {
    "chatspatial": {
      "command": "uvx",
      "args": [
        "chatspatial"
      ]
    }
  }
}