biolit

Name: biolit
Author: rachadele

rachadele

LLM-assisted biomedical literature screening and structured extraction. Supports multiple LLM providers and full-text retrieval.

Setup

Choose your client, copy the config, then fill in any required environment variables.

Add to Cursor Add to VS Code

claude mcp add biolit --env ANTHROPIC_API_KEY='<ANTHROPIC_API_KEY>' --env OPENAI_API_KEY='<OPENAI_API_KEY>' --env SEMANTIC_SCHOLAR_API_KEY='<SEMANTIC_SCHOLAR_API_KEY>' -- uvx biolit

~/.codex/config.toml

[mcp_servers.biolit]
command = "uvx"
args = ["biolit"]
env = { ANTHROPIC_API_KEY = "<ANTHROPIC_API_KEY>", OPENAI_API_KEY = "<OPENAI_API_KEY>", SEMANTIC_SCHOLAR_API_KEY = "<SEMANTIC_SCHOLAR_API_KEY>" }

# codex mcp add biolit --env ANTHROPIC_API_KEY='<ANTHROPIC_API_KEY>' --env OPENAI_API_KEY='<OPENAI_API_KEY>' --env SEMANTIC_SCHOLAR_API_KEY='<SEMANTIC_SCHOLAR_API_KEY>' -- uvx biolit

~/.cursor/mcp.json

{
  "mcpServers": {
    "biolit": {
      "command": "uvx",
      "args": [
        "biolit"
      ],
      "env": {
        "ANTHROPIC_API_KEY": "<ANTHROPIC_API_KEY>",
        "OPENAI_API_KEY": "<OPENAI_API_KEY>",
        "SEMANTIC_SCHOLAR_API_KEY": "<SEMANTIC_SCHOLAR_API_KEY>"
      }
    }
  }
}

.vscode/mcp.json

{
  "servers": {
    "biolit": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "biolit"
      ],
      "env": {
        "ANTHROPIC_API_KEY": "<ANTHROPIC_API_KEY>",
        "OPENAI_API_KEY": "<OPENAI_API_KEY>",
        "SEMANTIC_SCHOLAR_API_KEY": "<SEMANTIC_SCHOLAR_API_KEY>"
      }
    }
  }
}

~/.gemini/settings.json

{
  "mcpServers": {
    "biolit": {
      "command": "uvx",
      "args": [
        "biolit"
      ],
      "env": {
        "ANTHROPIC_API_KEY": "<ANTHROPIC_API_KEY>",
        "OPENAI_API_KEY": "<OPENAI_API_KEY>",
        "SEMANTIC_SCHOLAR_API_KEY": "<SEMANTIC_SCHOLAR_API_KEY>"
      }
    }
  }
}

claude_desktop_config.json

{
  "mcpServers": {
    "biolit": {
      "command": "uvx",
      "args": [
        "biolit"
      ],
      "env": {
        "ANTHROPIC_API_KEY": "<ANTHROPIC_API_KEY>",
        "OPENAI_API_KEY": "<OPENAI_API_KEY>",
        "SEMANTIC_SCHOLAR_API_KEY": "<SEMANTIC_SCHOLAR_API_KEY>"
      }
    }
  }
}

.trae/mcp.json

{
  "mcpServers": {
    "biolit": {
      "command": "uvx",
      "args": [
        "biolit"
      ],
      "env": {
        "ANTHROPIC_API_KEY": "<ANTHROPIC_API_KEY>",
        "OPENAI_API_KEY": "<OPENAI_API_KEY>",
        "SEMANTIC_SCHOLAR_API_KEY": "<SEMANTIC_SCHOLAR_API_KEY>"
      }
    }
  }
}

Environment variables

ANTHROPIC_API_KEY
OPENAI_API_KEY
SEMANTIC_SCHOLAR_API_KEY

Replace the placeholders with your own credentials and keep them out of version control.

Setup

Environment variables

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